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2012
Wyatt, ASJ, Falter JL, Lowe RJ, Humphries S, Waite AM.  2012.  Oceanographic forcing of nutrient uptake and release over a fringing coral reef. Limnology and Oceanography. 57(2):401-419. Abstract
Hosie, AM.  2012.  First records of Podophthalmus nacreus (Brachyura: Portunidae) from Western Australia. Marine Biodiversity Records. 5 Abstract
Gao, L, Hailu A.  2012.  Ranking management strategies with complex outcomes: An AHP-fuzzy evaluation of recreational fishing using an integrated agent-based model of a coral reef ecosystem. Environmental Modelling & Software. 31:3-18. Abstract
Fitzpatrick, BM, Harvey ES, Heyward AJ, Twiggs EJ, Colquhoun J.  2012.  Habitat specialization in tropical continental shelf demersal fish assemblages. PLoS ONE. 7(6):e39634. Abstract
Herwig, JN, Depczynski M, Roberts JD, Semmens JM, Gagliano M, Heyward AJ.  2012.  Using age-based life history data to investigate the life cycle and vulnerability of Octopus cyanea. PLoS ONE. 7(8):e43679. Abstract
2013
Hinrichs, S, Patten NL, Allcock RJN, Saunders SM, Strickland D, Waite AM.  2013.  Seasonal variations in energy levels and metabolic processes of two dominant Acropora species (A. spicifera and A. digitifera) at Ningaloo Reef. Coral Reefs. Abstract
Johansson, CL, Bellwood DR, Depczynski M, Hoey AS.  2013.  The distribution of the sea urchin Echinometra mathaei (de Blainville) and its predators on Ningaloo Reef, Western Australia: The implications for top-down control in an intact reef system. Journal of Experimental Marine Biology and Ecology. 442 Abstract
Johansson, CL, Leemput IA, Depczynski M, Hoey AS, Bellwood DR.  2013.  Key herbivores reveal limited functional redundancy on inshore coral reefs. Coral Reefs. Abstract
Hinrichs, S, Patten NL, Feng M, Strickland D, Waite AM.  2013.  Which Environmental Factors Predict Seasonal Variation in the Coral Health of Acropora digitifera and Acropora spicifera at Ningaloo Reef? PLoS ONE. 8(4) Abstract
Gao, L, Hailu A.  2013.  Identifying preferred management options: An integrated agent-based recreational fishing simulation model with an AHP-TOPSIS evaluation method. Ecological Modelling. 249:75-83.
Feng, M, McPhaden MJ, Xie S-P, Hafner J.  2013.  La Niña forces unprecedented Leeuwin Current warming in 2011. Scientific Reports. 3 Abstract
Wyatt, ASJ, Lowe RJ, Humphries S, Waite AM.  2013.  Particulate nutrient fluxes over a fringing coral reef: Source-sink dynamics inferred from carbon to nitrogen ratios and stable isotopes. Limnology and Oceanography. 58(1):409-427. Abstract
Heiniger, H, Cribb TH, Adlard RD.  2013.  Intra-specific variation of Kudoa spp. (Myxosporea: Multivalvulida) from apogonid fishes (Perciformes), including the description of two new species, K. cheilodipteri n. sp. and K. cookii n. sp., from Australian waters. Systematic Parasitology. 84(3):193-215. Abstract