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Hinrichs, S, Patten NL, Feng M, Strickland D, Waite AM.  2013.  Which Environmental Factors Predict Seasonal Variation in the Coral Health of Acropora digitifera and Acropora spicifera at Ningaloo Reef? PLoS ONE. 8(4) Abstract
Pattiaratchi, C.  2010.  WAMSI 3.5 final report: Characterisation and modelling of oceanographic processes in Ningaloo Reef and adjacent waters. :1-48. Download: WAMSI 3.5 final report.pdf (5.67 MB)
Pillans, R, Babcock R, Patterson T, How J, Hyndes G.  2009.  WAMSI 3.2.2e final report: Adequacy of zoning in the Ningaloo Marine Park. :1-83. Download: WAMSI 3.2.2e final report.pdf (7.99 MB)
Black, R, Johnson MS, Prince J, Brearley A.  2011.  WAMSI 3.2.2b final report: Diversity, abundance and distribution of intertidal invertebrate species in the Ningaloo Marine Park. :1-452. Download: WAMSI 3.2.2b final report.pdf (7.19 MB)
Babcock, R, Haywood M, Vanderklift M, Claplin G, Kleczkowski M, Dennis D, Skewes T, Milton D, Murphy N, Pillans R et al..  2008.  WAMSI 3.2.2a final report: Ecosystem impacts of human usage and the effectiveness of zoning for biodiversity conservation: Broad-scale fish census. :1-99. Download: WAMSI 3.2.2a final report.pdf (2.72 MB)
Meekan, M, Speed C, Planes S, McLean C, Bradshaw C.  2008.  WAMSI 3.1.4 final report: Population monitoring protocols for whale sharks (Rhincodon typus). :1-195. Download: WAMSI 3.1.4 final report.pdf (5.79 MB)
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Patten, NL, Wyatt ASJ, Lowe RJ, Waite AM.  2011.  Uptake of picophytoplankton, bacterioplankton and virioplankton by a fringing coral reef community (Ningaloo Reef, Australia). Coral Reefs. 30(3):555-567. Abstract
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Sleeman, JC, Meekan MG, Wilson SG, Polovina JJ, Stevens JD, Boggs GS, Bradshaw CJA.  2010.  To go or not to go with the flow: Environmental influences on whale shark movement patterns. Journal of Experimental Marine Biology and Ecology. 390(2):84-98. Abstract
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Woo, M, Pattiaratchi C, Schroeder W.  2006.  Summer surface circulation along the Gascoyne continental shelf, Western Australia. Continental Shelf Research. 26(1):132-152. Abstract
Hanson, CE, Pattiaratchi C, Waite AM.  2005.  Sporadic upwelling on a downwelling coast: Phytoplankton responses to spatially variable nutrient dynamics off the Gascoyne region of Western Australia. Continental Shelf Research. 25(12-13):1561-1582. Abstract
Hinrichs, S, Patten NL, Allcock RJN, Saunders SM, Strickland D, Waite AM.  2013.  Seasonal variations in energy levels and metabolic processes of two dominant Acropora species (A. spicifera and A. digitifera) at Ningaloo Reef. Coral Reefs. Abstract
Wilson, SG, Taylor JG, Pearce AF.  2001.  The seasonal aggregation of whale sharks at Ningaloo reef, Western Australia: Currents, migrations and the El Nino/Southern Oscillation. Environmental Biology of Fishes. 61(1):1-11. Abstract
Speed, CW, Meekan MG, Rowat D, Pierce SJ, Marshall AD, Bradshaw CJA.  2008.  Scarring patterns and relative mortality rates of Indian Ocean whale sharks. Journal of Fish Biology. 72(6):1488-1503. Abstract
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Pearce, AF, Feng M.  2013.  The rise and fall of the “marine heat wave” off Western Australia during the summer of 2010/2011. Journal of Marine Systems. 111-112:139-156.
Peart, RA.  2007.  A review of the Australian species of Ampithoe Leach, 1814 (Crustacea: Amphipoda: Ampithoidae) with descriptions of seventeen new species. Zootaxa. 1566:1-95. Abstract
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Meekan, MG, Bradshaw CJA, Press M, McLean C, Richards A, Quasnichka S, Taylor JG.  2006.  Population size and structure of whale sharks Rhincodon typus at Ningaloo Reef, Western Australia. Marine Ecology Progress Series. 319:275-285. Abstract
Hanson, CE, Waite AM, Thompson PA, Pattiaratchi C.  2007.  Phytoplankton community structure and nitrogen nutrition in Leeuwin Current and coastal waters off the Gascoyne region of Western Australia. Deep Sea Research Part II: Topical Studies in Oceanography. 54(8-10):902-924. Abstract
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Verspecht, F.  2002.  Oceanographic studies around the North West Cape, Western Australia. Environmental Engineering. Bachelor of Engineering:1-118. Abstract  Download: Verspecht Bachelor thesis 2002.pdf (4.12 MB)
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Taebi, S, Lowe RJ, Pattiaratchi CB, Ivey GN, Symonds G.  2012.  A numerical study of the dynamics of the wave-driven circulation within a fringing reef system. Ocean Dynamics. 62(4):585-602. Abstract
Van Dongeren, A, Lowe R, Pomeroy A, Trang DM, Roelvink D, Symonds G, Ranasinghe R.  2013.  Numerical modeling of low-frequency wave dynamics over a fringing coral reef. Coastal Engineering. 73:178-190.
Kelliher, S, Lusty C, Prophet M.  2011.  Ningaloo Turtle Program annual report 2010-2011. :1-62. Abstract  Download: Ningaloo turtle program annual report 2010_11.pdf (3.46 MB)
Gourlay, T, Markovina K, Prophet M, Whiting A.  2010.  Ningaloo Turtle Program annual report 2009-2010. :1-91. Abstract  Download: Ningaloo turtle program annual report 2009_10.pdf (4.43 MB)
Carter, R.  2003.  Ningaloo marine turtle conference Exmouth, WA. Ningaloo marine turtle conference Exmouth, WA. :1-26. Download: Ningaloo marine turtle conference 2003.pdf (644.53 KB)
Jones, T, Wood D, Hughes M, Deery M, Fredline L, Jones R, Fulton B, Pham T, Pambudi D, Dwyer L et al..  2011.  Ningaloo Collaboration Cluster: Socio-economics of tourism. :1-209. Abstract  Download: Socioeconomics of tourism final report.pdf (1.79 MB)
Last, PR, White WT, Puckridge M.  2010.  Neotrygon ningalooensis n. sp. (Myliobatoidei: Dasyatidae), a new maskray from Australia. Aqua, International Journal of Ichthyology. 16:37-50. Abstract