@article {409,
	title = {A numerical model of wave- and current-driven nutrient uptake by coral reef communities},
	journal = {Ecological Modelling},
	volume = {222},
	year = {2011},
	month = {4/2011},
	pages = {1456-1470},
	abstract = {We developed a numerical model capable of simulating the spatial zonation of nutrient uptake in coral reef systems driven by hydrodynamic forcing (both from waves and currents). Relationships between nutrient uptake and bed stress derived from flume and field studies were added to a four-component biogeochemical model embedded within a three-dimensional (3-D) hydrodynamic ocean model coupled to a numerical wave model. The performance of the resulting coupled physical-biogeochemical model was first evaluated in an idealized one-dimensional (1-D) channel for both a pure current and a combined wave-current flow. Waves in the channel were represented by an oscillatory flow with constant amplitude and frequency. The simulated nutrient concentrations were in good agreement with the analytical solution for nutrient depletion along a uniform channel, as well as with existing observations of phosphate uptake across a real reef flat. We then applied this integrated model to investigate more complex two-dimensional (2-D) nutrient dynamics, firstly to an idealized coral reef-lagoon morphology, and secondly to a realistic section of Ningaloo Reef in Western Australia, where nutrients were advected into the domain via alongshore coastal currents. Both the idealized reef and Ningaloo Reef simulations showed similar patterns of maximum uptake rates on the shallow forereef and reef crest, and with nutrient concentration decreasing as water flowed over the reef flat. As a result of the cumulative outflow of nutrient-depleted water exiting the reef channels and then being advected down the coast by alongshore currents, both reef simulations exhibited substantial alongshore variation in nutrient concentrations. The coupled models successfully reproduced the observed spatial-variability in nitrate concentration across the Ningaloo Reef system.},
	keywords = {nutrients, oceanography},
	issn = {03043800},
	doi = {10.1016/j.ecolmodel.2011.01.014},
	url = {http://www.sciencedirect.com/science/article/pii/S0304380011000469},
	author = {Zhang, Zhenlin and Lowe, Ryan and Falter, James and Ivey, Greg}
}
