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Hughes, M, Jones R, Jones T, Christensen J.  2012.  World stage, local dramas? The World Heritage designations of Shark Bay and Ningaloo Reef Institute of Australian Geographers Conference.
Davis, D, Banks S, Birtles A, Valentine P, Cuthill M.  1997.  Whale sharks in Ningaloo Marine Park: Managing tourism in an Australian marine protected area. Tourism Management. 18(5):259-271. Abstract
Catlin, J, Jones R.  2010.  Whale shark tourism at Ningaloo Marine Park: A longitudinal study of wildlife tourism. Tourism Management. 31(3):386-394. Abstract
Collins, LB, Twiggs EJ, Tecchiato S.  2011.  WAMSI 3.4.2 final report: Ningaloo Marine Park – Characterisation of geomorphology and sedimentology. :1-28. Download: WAMSI 3.4.2 final report.pdf (429.49 KB)
Collins, LB, Twiggs EJ.  2011.  WAMSI 3.4.1 final report: Ningaloo Marine Park – Reef morphology and growth history. :1-80. Download: WAMSI 3.4.1 final report.pdf (4.41 MB)
Babcock, R, Haywood M, Vanderklift M, Murphy N, Clapin G, Limbourn A, Kozak D, Thomson D, McCleod I, Milton D et al..  2009.  WAMSI 3.2.2d final report: Lagoon invertebrates final report and monitoring recommendations. :1-40. Download: WAMSI 3.2.2d final report.pdf (545.34 KB)
Babcock, R, Haywood M, Vanderklift M, Claplin G, Kleczkowski M, Dennis D, Skewes T, Milton D, Murphy N, Pillans R et al..  2008.  WAMSI 3.2.2a final report: Ecosystem impacts of human usage and the effectiveness of zoning for biodiversity conservation: Broad-scale fish census. :1-99. Download: WAMSI 3.2.2a final report.pdf (2.72 MB)
Collins, LB, Stevens A.  2010.  WAMSI 3.10 final report: Assessment of coastal groundwater and linkages with Ningaloo Reef. :1-79. Download: WAMSI 3.10 final report.pdf (4.66 MB)
Depczynski, M, Heyward A, Case M, Colquhoun J, O'Leary R, Radford B, Wilson S, Holmes T.  2011.  WAMSI 3.1.2 final report: Methods of monitoring the health of benthic communities at Ningaloo - Coral and fish recruitment. :1-101. Download: WAMSI 3.1.2 final report.pdf (4.2 MB)
Colquhoun, J, Heyward A.  2008.  WAMSI 3.1.1 final report: Ningaloo Reef Marine Park deepwater benthic biodiversity survey. :1-192. Download: WAMSI 3.1.1 final report.pdf (5.89 MB)
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Downie, AJ, Bray RA, Jones BEH, Cribb TH.  2011.  Taxonomy, host-specificity and biogeography of Symmetrovesicula Yamaguti, 1938 (Digenea: Fellodistomidae) from chaetodontids (Teleostei: Perciformes) in the tropical Indo-west Pacific region. Systematic Parasitology. 78(1):1-18. Abstract
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James, NP, Collins LB, Bone Y, Hallock P.  1999.  Subtropical carbonates in a temperate realm; modern sediments on the Southwest Australian shelf. Journal of Sedimentary Research. 69(6):1297-1321. Abstract
Bray, RA, Cribb TH.  2004.  Stephanostomum tantabiddii n. sp. (Digenea: Acanthocolpidae) from Carangoides fulvoguttatus (Forsskal, 1775) (Perciformes: Carangidae) from Ningaloo Reef, Western Australia. Zootaxa. 457:1-8. Abstract
Bray, RA, Cribb TH.  2006.  Stephanostomum talakitok n. sp. (Digenea: Acanthocolpidae) from the golden trevalley, Gnathanodon speciosus (Perciformes: Carangidae), from Ningaloo Reef, Western Australia. Zootaxa. 1104:59-68. Abstract
Heyward, A, Fromont J, Schonberg CHL, Colquhoun J, Radford B, Gomez O.  2010.  The sponge gardens of Ningaloo Reef, Western Australia. The Open Marine Biology Journal. 4(1):3-11. Abstract
Falter, JL, Lowe RJ, Atkinson MJ, Cuet P.  2012.  Seasonal coupling and de-coupling of net calcification rates from coral reef metabolism and carbonate chemistry at Ningaloo Reef, Western Australia. Journal of Geophysical Research. 117(C5) Abstract
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Colman, JG.  1997.  A review of the biology and ecology of the whale shark. Journal of Fish Biology. 51(6):1219-1234. Abstract
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Hahesy, C.  2004.  Quaternary geological processes and natural resource management of the coastal plain adjacent to northern Ningaloo Marine Park. Applied Geology. Bachelor of Science (Honours):1-125. Abstract  Download: Hahesy Honours thesis 2004.pdf (23.5 MB)
Leeden, CL.  2003.  Quaternary coastal evolution adjacent to southern Ningaloo Reef, Western Australia: Implications for land use planning. Applied Geology. Bachelor of Science (Honours):1-135. Abstract  Download: Leeden Honours thesis 2003.pdf (9.76 MB)
Blackwell, N.  2002.  Quarternary coastal evolution adjacent to the Ningaloo Reef, Western Australia, and implications for land use planning. Applied Geology. Bachelor of Science (Honours):1-110. Abstract  Download: Blackwell Honours thesis 2002.pdf (4.66 MB)
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Cater, C.  2008.  Perceptions of and Interactions with Marine Environments: Diving Attractions from Great Whites to Pygmy Seahorses. New Frontiers in Marine Tourism: Diving Experiences, Sustainability, Management. :49-64.
Schmidt, JV, Chen CC, Sheikh SI, Meekan MG, Norman BM, Joung SJ.  2010.  Paternity analysis in a litter of whale shark embryos. Endangered Species Research. 12(2):117-124. Abstract
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Gragan, MK, Chivas AR.  1995.  Oxygen isotopes in western Australian coral reveal Pinatubo aerosol‐induced cooling in the Western Pacific Warm Pool. Geophysical Research Letters. 22(9):1069-1072. Abstract
Bray, RA, Cribb TH.  2002.  Observations on the phylogeny of Opisthadena Linton, 1910 and related genera (Hemiuridae: Opisthadeninae) from Australian and French Polynesian waters. Folia Parasitologica. 49:279-290. Abstract
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Silverstein, RN, Correa AMS, LaJeunesse TC, Baker AC.  2011.  Novel algal symbiont (Symbiodinium spp.) diversity in reef corals of Western Australia. Marine Ecology Progress Series. 422:63-75. Abstract