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Hughes, M, Jones R, Jones T, Christensen J.  2012.  World stage, local dramas? The World Heritage designations of Shark Bay and Ningaloo Reef Institute of Australian Geographers Conference.
Hinrichs, S, Patten NL, Feng M, Strickland D, Waite AM.  2013.  Which Environmental Factors Predict Seasonal Variation in the Coral Health of Acropora digitifera and Acropora spicifera at Ningaloo Reef? PLoS ONE. 8(4) Abstract
Hearn, CJ.  1999.  Wave‐breaking hydrodynamics within coral reef systems and the effect of changing relative sea level. Journal of Geophysical Research Oceans. 104:30007-30019. Abstract
Pillans, R, Babcock R, Patterson T, How J, Hyndes G.  2009.  WAMSI 3.2.2e final report: Adequacy of zoning in the Ningaloo Marine Park. :1-83. Download: WAMSI 3.2.2e final report.pdf (7.99 MB)
Babcock, R, Haywood M, Vanderklift M, Murphy N, Clapin G, Limbourn A, Kozak D, Thomson D, McCleod I, Milton D et al..  2009.  WAMSI 3.2.2d final report: Lagoon invertebrates final report and monitoring recommendations. :1-40. Download: WAMSI 3.2.2d final report.pdf (545.34 KB)
Vergés, A, Hyndes GA, Vanderklift MA.  2011.  WAMSI 3.2.2c final report: Trophic effects through herbivory at Ningaloo Reef. :1-129. Download: WAMSI 3.2.2c final report.pdf (6.51 MB)
Babcock, R, Haywood M, Vanderklift M, Claplin G, Kleczkowski M, Dennis D, Skewes T, Milton D, Murphy N, Pillans R et al..  2008.  WAMSI 3.2.2a final report: Ecosystem impacts of human usage and the effectiveness of zoning for biodiversity conservation: Broad-scale fish census. :1-99. Download: WAMSI 3.2.2a final report.pdf (2.72 MB)
Depczynski, M, Heyward A, Radford B, O'Leary R, Babcock R, Haywood M, Thomson D.  2009.  WAMSI 3.1.3 final report: Stock assessment of targeted invertebrates at Ningaloo Reef. :1-108. Download: WAMSI 3.1.3 final report.pdf (2.3 MB)
Depczynski, M, Heyward A, Case M, Colquhoun J, O'Leary R, Radford B, Wilson S, Holmes T.  2011.  WAMSI 3.1.2 final report: Methods of monitoring the health of benthic communities at Ningaloo - Coral and fish recruitment. :1-101. Download: WAMSI 3.1.2 final report.pdf (4.2 MB)
Colquhoun, J, Heyward A.  2008.  WAMSI 3.1.1 final report: Ningaloo Reef Marine Park deepwater benthic biodiversity survey. :1-192. Download: WAMSI 3.1.1 final report.pdf (5.89 MB)
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Wyatt, ASJ, Waite AM, Humphries S.  2010.  Variability in isotope discrimination factors in coral reef fishes: Implications for diet and food web reconstruction. PLoS ONE. 5(10):e13682. Abstract
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Herwig, JN, Depczynski M, Roberts JD, Semmens JM, Gagliano M, Heyward AJ.  2012.  Using age-based life history data to investigate the life cycle and vulnerability of Octopus cyanea. PLoS ONE. 7(8):e43679. Abstract
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Holley, DK, Lawler IR, Gales NJ.  2006.  Summer survey of dugong distribution and abundance in Shark Bay reveals additional key habitat area. Wildlife Research. 33(3):243-250. Abstract
James, NP, Collins LB, Bone Y, Hallock P.  1999.  Subtropical carbonates in a temperate realm; modern sediments on the Southwest Australian shelf. Journal of Sedimentary Research. 69(6):1297-1321. Abstract
Nichol, SL, Anderson TJ, Battershill C, Brooke BP.  2012.  Submerged Reefs and Aeolian Dunes as Inherited Habitats, Point Cloates, Carnarvon Shelf, Western Australia. Seafloor Geomorphology as Benthic Habitat. :397-407. Abstract
Wyatt, ASJ, Waite AM, Humphries S.  2012.  Stable isotope analysis reveals community-level variation in fish trophodynamics across a fringing coral reef. Coral Reefs. 31(4):1029-1044. Abstract
Hanson, CE, Pattiaratchi C, Waite AM.  2005.  Sporadic upwelling on a downwelling coast: Phytoplankton responses to spatially variable nutrient dynamics off the Gascoyne region of Western Australia. Continental Shelf Research. 25(12-13):1561-1582. Abstract
Heyward, A, Fromont J, Schonberg CHL, Colquhoun J, Radford B, Gomez O.  2010.  The sponge gardens of Ningaloo Reef, Western Australia. The Open Marine Biology Journal. 4(1):3-11. Abstract
Vergés, A, Vanderklift MA, Doropoulos C, Hyndes GA.  2011.  Spatial patterns in herbivory on a coral reef are ifluenced by structural complexity but not by algal traits. PLoS ONE. 6(2):e17115. Abstract
Hinrichs, S, Patten NL, Allcock RJN, Saunders SM, Strickland D, Waite AM.  2013.  Seasonal variations in energy levels and metabolic processes of two dominant Acropora species (A. spicifera and A. digitifera) at Ningaloo Reef. Coral Reefs. Abstract
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Holmberg, J, Norman B, Arzoumanian Z.  2008.  Robust, comparable population metrics through collaborative photo-monitoring of whale sharks Rhincodon typus. Ecological Applications. 18(1):222-233. Abstract
Wilson, SK, Babcock RC, Fisher R, Holmes TH, Moore JAY, Thomson DP.  2012.  Relative and combined effects of habitat and fishing on reef fish communities across a limited fishing gradient at Ningaloo. Marine Environmental Research. 81:1-11.
Gao, L, Hailu A.  2012.  Ranking management strategies with complex outcomes: An AHP-fuzzy evaluation of recreational fishing using an integrated agent-based model of a coral reef ecosystem. Environmental Modelling & Software. 31:3-18. Abstract
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Hahesy, C.  2004.  Quaternary geological processes and natural resource management of the coastal plain adjacent to northern Ningaloo Marine Park. Applied Geology. Bachelor of Science (Honours):1-125. Abstract  Download: Hahesy Honours thesis 2004.pdf (23.5 MB)
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Huang, Z, Nichol SL, Siwabessy JPW, Daniell J, Brooke BP.  2012.  Predictive modelling of seabed sediment parameters using multibeam acoustic data: a case study on the Carnarvon Shelf, Western Australia. International Journal of Geographical Information Science. 26(2):283-307. Abstract