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Davis, D, Banks S, Birtles A, Valentine P, Cuthill M.  1997.  Whale sharks in Ningaloo Marine Park: Managing tourism in an Australian marine protected area. Tourism Management. 18(5):259-271. Abstract
Stevens, JD.  2007.  Whale shark (Rhincodon typus) biology and ecology: A review of the primary literature. Fisheries Research. 84(1):4-9. Abstract
Collins, LB, Twiggs EJ.  2011.  WAMSI 3.4.1 final report: Ningaloo Marine Park – Reef morphology and growth history. :1-80. Download: WAMSI 3.4.1 final report.pdf (4.41 MB)
Babcock, R, Haywood M, Vanderklift M, Murphy N, Clapin G, Limbourn A, Kozak D, Thomson D, McCleod I, Milton D et al..  2009.  WAMSI 3.2.2d final report: Lagoon invertebrates final report and monitoring recommendations. :1-40. Download: WAMSI 3.2.2d final report.pdf (545.34 KB)
Vergés, A, Hyndes GA, Vanderklift MA.  2011.  WAMSI 3.2.2c final report: Trophic effects through herbivory at Ningaloo Reef. :1-129. Download: WAMSI 3.2.2c final report.pdf (6.51 MB)
Black, R, Johnson MS, Prince J, Brearley A.  2011.  WAMSI 3.2.2b final report: Diversity, abundance and distribution of intertidal invertebrate species in the Ningaloo Marine Park. :1-452. Download: WAMSI 3.2.2b final report.pdf (7.19 MB)
Babcock, R, Haywood M, Vanderklift M, Claplin G, Kleczkowski M, Dennis D, Skewes T, Milton D, Murphy N, Pillans R et al..  2008.  WAMSI 3.2.2a final report: Ecosystem impacts of human usage and the effectiveness of zoning for biodiversity conservation: Broad-scale fish census. :1-99. Download: WAMSI 3.2.2a final report.pdf (2.72 MB)
Stevens, JD, Last PR, White WT, McAuley MG, Meekan MG.  2009.  WAMSI 3.2.1 final report: Diversity, abundance and habitat utilisation of sharks and rays. :1-125. Download: WAMSI 3.2.1 final report.pdf (7.88 MB)
Meekan, M, Speed C, Planes S, McLean C, Bradshaw C.  2008.  WAMSI 3.1.4 final report: Population monitoring protocols for whale sharks (Rhincodon typus). :1-195. Download: WAMSI 3.1.4 final report.pdf (5.79 MB)
Depczynski, M, Heyward A, Radford B, O'Leary R, Babcock R, Haywood M, Thomson D.  2009.  WAMSI 3.1.3 final report: Stock assessment of targeted invertebrates at Ningaloo Reef. :1-108. Download: WAMSI 3.1.3 final report.pdf (2.3 MB)
Depczynski, M, Heyward A, Case M, Colquhoun J, O'Leary R, Radford B, Wilson S, Holmes T.  2011.  WAMSI 3.1.2 final report: Methods of monitoring the health of benthic communities at Ningaloo - Coral and fish recruitment. :1-101. Download: WAMSI 3.1.2 final report.pdf (4.2 MB)
Colquhoun, J, Heyward A.  2008.  WAMSI 3.1.1 final report: Ningaloo Reef Marine Park deepwater benthic biodiversity survey. :1-192. Download: WAMSI 3.1.1 final report.pdf (5.89 MB)
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Wyatt, ASJ, Waite AM, Humphries S.  2010.  Variability in isotope discrimination factors in coral reef fishes: Implications for diet and food web reconstruction. PLoS ONE. 5(10):e13682. Abstract
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Herwig, JN, Depczynski M, Roberts JD, Semmens JM, Gagliano M, Heyward AJ.  2012.  Using age-based life history data to investigate the life cycle and vulnerability of Octopus cyanea. PLoS ONE. 7(8):e43679. Abstract
Patten, NL, Wyatt ASJ, Lowe RJ, Waite AM.  2011.  Uptake of picophytoplankton, bacterioplankton and virioplankton by a fringing coral reef community (Ningaloo Reef, Australia). Coral Reefs. 30(3):555-567. Abstract
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Wilson, SG, Newbound DR.  2001.  Two whale shark faecal samples from Ningaloo Reef, Western Australia. Bulletin of Marine Science. 68(2):361-362. Abstract
Stepien, A, Blazewicz-Paszkowycz M.  2009.  Two new species of the genus Tanzanapseudes Băcescu, 1975 (Tanaidacea: Apseudomorpha: Tanzanapseudidae) from mid-west Australia. Zootaxa. 2283:40-50. Abstract
Karanovic, I.  2012.  Two new Sarsiellinae (Ostracoda: Myodocopa) from Ningaloo Reef (Western Australia), with a cladistic analysis of the subfamily and keys to genera. Journal of Natural History. 46(37-38):2285-2327. Abstract
Speed, CW, Meekan MG, Field IC, McMahon CR, Abrantes K, Bradshaw CJA.  2012.  Trophic ecology of reef sharks determined using stable isotopes and telemetry. Coral Reefs. 31(2):357-367. Abstract
Downie, AJ, Bray RA, Jones BEH, Cribb TH.  2011.  Taxonomy, host-specificity and biogeography of Symmetrovesicula Yamaguti, 1938 (Digenea: Fellodistomidae) from chaetodontids (Teleostei: Perciformes) in the tropical Indo-west Pacific region. Systematic Parasitology. 78(1):1-18. Abstract
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Beckley, LE, Lombard AT.  2012.  A systematic evaluation of the incremental protection of broad-scale habitats at Ningaloo Reef, Western Australia. Marine and Freshwater Research. 63(1):17-22. Abstract
Holley, DK, Lawler IR, Gales NJ.  2006.  Summer survey of dugong distribution and abundance in Shark Bay reveals additional key habitat area. Wildlife Research. 33(3):243-250. Abstract
Bray, RA, Cribb TH.  2004.  Stephanostomum tantabiddii n. sp. (Digenea: Acanthocolpidae) from Carangoides fulvoguttatus (Forsskal, 1775) (Perciformes: Carangidae) from Ningaloo Reef, Western Australia. Zootaxa. 457:1-8. Abstract
Bray, RA, Cribb TH.  2006.  Stephanostomum talakitok n. sp. (Digenea: Acanthocolpidae) from the golden trevalley, Gnathanodon speciosus (Perciformes: Carangidae), from Ningaloo Reef, Western Australia. Zootaxa. 1104:59-68. Abstract
Heyward, A, Fromont J, Schonberg CHL, Colquhoun J, Radford B, Gomez O.  2010.  The sponge gardens of Ningaloo Reef, Western Australia. The Open Marine Biology Journal. 4(1):3-11. Abstract