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Hanson, CE, Pattiaratchi C, Waite AM.  2005.  Sporadic upwelling on a downwelling coast: Phytoplankton responses to spatially variable nutrient dynamics off the Gascoyne region of Western Australia. Continental Shelf Research. 25(12-13):1561-1582. Abstract
[Anonymous].  2012.  Stressed ecosystems: Better decisions for Australia's future - Recommendations Theo Murphy High Flyers Think Tank 2011. Abstract  Download: Think Tank Recommendations 2011.pdf (682.4 KB)
Woo, M, Pattiaratchi C, Schroeder W.  2006.  Summer surface circulation along the Gascoyne continental shelf, Western Australia. Continental Shelf Research. 26(1):132-152. Abstract
Beckley, LE, Lombard AT.  2012.  A systematic evaluation of the incremental protection of broad-scale habitats at Ningaloo Reef, Western Australia. Marine and Freshwater Research. 63(1):17-22. Abstract
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Sleeman, JC, Meekan MG, Wilson SG, Polovina JJ, Stevens JD, Boggs GS, Bradshaw CJA.  2010.  To go or not to go with the flow: Environmental influences on whale shark movement patterns. Journal of Experimental Marine Biology and Ecology. 390(2):84-98. Abstract
Wilson, SG, Newbound DR.  2001.  Two whale shark faecal samples from Ningaloo Reef, Western Australia. Bulletin of Marine Science. 68(2):361-362. Abstract
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Patten, NL, Wyatt ASJ, Lowe RJ, Waite AM.  2011.  Uptake of picophytoplankton, bacterioplankton and virioplankton by a fringing coral reef community (Ningaloo Reef, Australia). Coral Reefs. 30(3):555-567. Abstract
Herwig, JN, Depczynski M, Roberts JD, Semmens JM, Gagliano M, Heyward AJ.  2012.  Using age-based life history data to investigate the life cycle and vulnerability of Octopus cyanea. PLoS ONE. 7(8):e43679. Abstract
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Wyatt, ASJ, Waite AM, Humphries S.  2010.  Variability in isotope discrimination factors in coral reef fishes: Implications for diet and food web reconstruction. PLoS ONE. 5(10):e13682. Abstract
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Colquhoun, J, Heyward A.  2008.  WAMSI 3.1.1 final report: Ningaloo Reef Marine Park deepwater benthic biodiversity survey. :1-192. Download: WAMSI 3.1.1 final report.pdf (5.89 MB)
Depczynski, M, Heyward A, Case M, Colquhoun J, O'Leary R, Radford B, Wilson S, Holmes T.  2011.  WAMSI 3.1.2 final report: Methods of monitoring the health of benthic communities at Ningaloo - Coral and fish recruitment. :1-101. Download: WAMSI 3.1.2 final report.pdf (4.2 MB)
Depczynski, M, Heyward A, Radford B, O'Leary R, Babcock R, Haywood M, Thomson D.  2009.  WAMSI 3.1.3 final report: Stock assessment of targeted invertebrates at Ningaloo Reef. :1-108. Download: WAMSI 3.1.3 final report.pdf (2.3 MB)
Meekan, M, Speed C, Planes S, McLean C, Bradshaw C.  2008.  WAMSI 3.1.4 final report: Population monitoring protocols for whale sharks (Rhincodon typus). :1-195. Download: WAMSI 3.1.4 final report.pdf (5.79 MB)
Collins, LB, Stevens A.  2010.  WAMSI 3.10 final report: Assessment of coastal groundwater and linkages with Ningaloo Reef. :1-79. Download: WAMSI 3.10 final report.pdf (4.66 MB)
Stevens, JD, Last PR, White WT, McAuley MG, Meekan MG.  2009.  WAMSI 3.2.1 final report: Diversity, abundance and habitat utilisation of sharks and rays. :1-125. Download: WAMSI 3.2.1 final report.pdf (7.88 MB)
Babcock, R, Haywood M, Vanderklift M, Claplin G, Kleczkowski M, Dennis D, Skewes T, Milton D, Murphy N, Pillans R et al..  2008.  WAMSI 3.2.2a final report: Ecosystem impacts of human usage and the effectiveness of zoning for biodiversity conservation: Broad-scale fish census. :1-99. Download: WAMSI 3.2.2a final report.pdf (2.72 MB)
Black, R, Johnson MS, Prince J, Brearley A.  2011.  WAMSI 3.2.2b final report: Diversity, abundance and distribution of intertidal invertebrate species in the Ningaloo Marine Park. :1-452. Download: WAMSI 3.2.2b final report.pdf (7.19 MB)
Vergés, A, Hyndes GA, Vanderklift MA.  2011.  WAMSI 3.2.2c final report: Trophic effects through herbivory at Ningaloo Reef. :1-129. Download: WAMSI 3.2.2c final report.pdf (6.51 MB)
Babcock, R, Haywood M, Vanderklift M, Murphy N, Clapin G, Limbourn A, Kozak D, Thomson D, McCleod I, Milton D et al..  2009.  WAMSI 3.2.2d final report: Lagoon invertebrates final report and monitoring recommendations. :1-40. Download: WAMSI 3.2.2d final report.pdf (545.34 KB)
Pillans, R, Babcock R, Patterson T, How J, Hyndes G.  2009.  WAMSI 3.2.2e final report: Adequacy of zoning in the Ningaloo Marine Park. :1-83. Download: WAMSI 3.2.2e final report.pdf (7.99 MB)
Little, LR, Thebaud O, Boschetti F, McDonald AD, Marriott R, Wise B, Lenanton R.  2011.  WAMSI 3.2.3 final report: An evaluation of management strategies for line fishing in the Ningaloo Marine Park. :1-118. Download: WAMSI 3.2.3 final report.pdf (1.2 MB)
Collins, LB, Twiggs EJ.  2011.  WAMSI 3.4.1 final report: Ningaloo Marine Park – Reef morphology and growth history. :1-80. Download: WAMSI 3.4.1 final report.pdf (4.41 MB)
Collins, LB, Twiggs EJ, Tecchiato S.  2011.  WAMSI 3.4.2 final report: Ningaloo Marine Park – Characterisation of geomorphology and sedimentology. :1-28. Download: WAMSI 3.4.2 final report.pdf (429.49 KB)
Pattiaratchi, C.  2010.  WAMSI 3.5 final report: Characterisation and modelling of oceanographic processes in Ningaloo Reef and adjacent waters. :1-48. Download: WAMSI 3.5 final report.pdf (5.67 MB)
Waples, K.  2011.  WAMSI 3.6 final report: Scientific coordination: Administration, communication and data management. :1-14. Download: WAMSI 3.6 final report.pdf (93.32 KB)